PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00058.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 164aa    MW: 18432.6 Da    PI: 4.2416
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00058.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB78.68.7e-2511102392
                    NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv.y. 86 
                              ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +++se+++ c++e+++ti+++ +l al  lGf +yve++ + y 
  Rsa1.0_00058.1_g00021.1  11 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAaYe 96 
                              6899***************************************************************************9865142 PP

                    NF-YB  87 lkkyre 92 
                               +ky  
  Rsa1.0_00058.1_g00021.1  97 QHKYET 102
                              345544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-398139IPR009072Histone-fold
SuperFamilySSF471136.63E-3612141IPR009072Histone-fold
PfamPF008087.5E-221479IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE  60
VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY ETMQDSQRSV KMNSGAEMTE  120
EEAAAEQQRM FAEARARMNG GVSIPQPDQE QQVDDNTQQS NLQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-351213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00058.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4284001e-140AF428400.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
GenBankAK2271641e-140AK227164.1 Arabidopsis thaliana mRNA for DR1-like protein, complete cds, clone: RAFL09-87-H07.
GenBankAY0870171e-140AY087017.1 Arabidopsis thaliana clone 30536 mRNA, complete sequence.
GenBankAY1255441e-140AY125544.1 Arabidopsis thaliana AT5g08190/T22D6_130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443876.11e-119PREDICTED: protein Dr1 homolog
SwissprotP495921e-103NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1J3JK731e-105A0A1J3JK73_NOCCA; Protein Dr1-like protein
STRINGXP_006288820.11e-103(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38282660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.24e-75nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]