PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00060.1_g00029.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 323aa    MW: 36509.9 Da    PI: 5.9502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00060.1_g00029.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14125176155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+++  A++Y+k+L+
  Rsa1.0_00060.1_g00029.1 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASVVGGAINYLKELE 176
                              79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.83E-12123180No hitNo description
SuperFamilySSF474591.11E-16123188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.209124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-12125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.65247323IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MALEAIVYPQ DPFSFISYKD LQSHDLYFQQ EEDRDPLETK NNIKLGQEQR QGFASISYNG  60
KSGDNNDDYN YNDQEDLQWP RDDLPYGSIV DTENQPPPLV LAMGEGRRKR RRTKSSKNKE  120
EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYAQRGD QASVVGGAIN YLKELEHHLQ  180
SMEPPVNTPA IREAGGGPGD HKTVAASSSR PFLDFFAFPQ YSRRPSSSLV AEGTAEIEVT  240
MVESHASVKI LAKKRPKQLL KLVASIQSLR LTVLHLNVTT RDDSVLYSIS LKVEEGSQLN  300
TVEDIAAAVN QILRRIEEDS SFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111RKRRR
2107112RKRRRT
3125136RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00060.1_g00029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442650.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A078IKL00.0A0A078IKL0_BRANA; BnaC06g24170D protein
STRINGBo6g092570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-172bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]