PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00062.1_g00030.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-other
Protein Properties Length: 116aa    MW: 13394.1 Da    PI: 10.2606
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00062.1_g00030.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.97.3e-1310491656
                             HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++F+++++p+ ++r +L+++lgL  rq+k+WF NrR++ k
  Rsa1.0_00062.1_g00030.1 10 DAEFQECPHPDDKQRNQLSRELGLAPRQIKFWF-NRRTQLK 49
                             589******************************.8998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.548152IPR001356Homeobox domain
SMARTSM003891.0E-4355IPR001356Homeobox domain
SuperFamilySSF466897.94E-12962IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-131056IPR009057Homeodomain-like
PfamPF000462.4E-101049IPR001356Homeobox domain
CDDcd000861.70E-101152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MSAAIKDVVD AEFQECPHPD DKQRNQLSRE LGLAPRQIKF WFNRRTQLKA QHERAYNNAL  60
RSSGFNDLKS RGFNGLFSQI EDVRDKHQKS APAPLVVRES PLRYNKNLQV ITDSTL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00062.1_g00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1668217e-54DQ166821.1 Brassica napus baby boom interacting protein 1A (BIP1A) mRNA, complete cds.
GenBankDQ1824897e-54DQ182489.1 Brassica napus baby boom interacting protein 1B mRNA, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17003611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.13e-26homeodomain GLABROUS 11