PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00062.1_g00036.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 579aa    MW: 64089 Da    PI: 6.1785
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00062.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.6e-11211267155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Rsa1.0_00062.1_g00036.1 211 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEEKAARAYDLAALKYWG 267
                              57*******************88885555446666.779999**************98 PP
2AP251.13.2e-16310361155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Rsa1.0_00062.1_g00036.1 310 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 361
                              57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-8211267IPR001471AP2/ERF domain
CDDcd000181.26E-18211275No hitNo description
SuperFamilySSF541711.31E-14211276IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-12212276IPR001471AP2/ERF domain
SMARTSM003805.6E-22212281IPR001471AP2/ERF domain
PROSITE profilePS5103217.372212275IPR001471AP2/ERF domain
PRINTSPR003672.8E-6213224IPR001471AP2/ERF domain
PfamPF008474.1E-11310361IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-17310371IPR016177DNA-binding domain
CDDcd000183.13E-24310371No hitNo description
Gene3DG3DSA:3.30.730.101.3E-17311370IPR001471AP2/ERF domain
PROSITE profilePS5103218.874311369IPR001471AP2/ERF domain
SMARTSM003808.8E-33311375IPR001471AP2/ERF domain
PRINTSPR003672.8E-6351371IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MNSMNNNWLG FSLSPYDQNT HRTCVDSSTD TTAVDVAGEY CYDMTAASDE SSAVQTSFPS  60
PFGVVLDAFT RDNNSHSRDW DINGGVCNNI HSNDQNEPKL ENFFGRTTTI YNTSENGGDG  120
NGGCGGGDDS RGSLGLSMIR TWLMNQPVSN MDHQDNNGTG ARGLLLSMNS STTCDSNTYN  180
NGNVALQEKT IVDSVDATPK KATESFGQRT SIYRGVTRHR WTGRYEAHLW DNSCKREGQA  240
RKGRQGGYDK EEKAARAYDL AALKYWGTTT TTNFPMNEYE KEVEEMNHMT RQEYVASLRR  300
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFGTQEEAAE AYDIAAIKFR  360
GLSAVTNFEM SRYNVKAILE SLSLPIGSAA KRLKEVNHSV PSMMLDKNVS ESENNTSSWQ  420
NAALQHHHGR DLSLLQQHQE RYNNYHDGGN LSPERASACF KLEEKQHHFL SNSPSLMANI  480
DHRSSDWDDS VTVCGNVVAY GGYQGLAVPV GTSVICDAMA AEEIAYDARN HYYFAQQLHQ  540
QGDFSGAVSN NVGSNMYFHG EGGGEGAPAF TELERHLEK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00062.1_g00036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3179040.0AF317904.1 Brassica napus AP2/EREBP transcription factor BABY BOOM1 (BBM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467647.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN20.0BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A3P6AK080.0A0A3P6AK08_BRACM; Uncharacterized protein
STRINGBo2g013700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein