PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00064.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 71aa    MW: 8632.03 Da    PI: 11.2869
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00064.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.2e-201265356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             + ++f++eq++ Le +Fe++ ++  +++ +LA++lgL  rqV +WFqN+Ra++k
  Rsa1.0_00064.1_g00008.1 12 SQRRFSEEQIKSLEMMFESETKLEPRKKVQLARELGLHPRQVAIWFQNKRARWK 65
                             6689*************************************************9 PP
2HD-ZIP_I/II92.73.9e-301368358
              HD-ZIP_I/II  3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkq 58
                             +rr+s+eq+k+LE++Fe+e+kLep++Kv+lareLgl+prqva+WFqn+RAR+k+k+
  Rsa1.0_00064.1_g00008.1 13 QRRFSEEQIKSLEMMFESETKLEPRKKVQLARELGLHPRQVAIWFQNKRARWKSKE 68
                             89****************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.02E-18667IPR009057Homeodomain-like
PROSITE profilePS5007117.508767IPR001356Homeobox domain
SMARTSM003896.1E-16971IPR001356Homeobox domain
CDDcd000863.01E-111068No hitNo description
PfamPF000465.1E-181165IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.6E-201369IPR009057Homeodomain-like
PRINTSPR000312.2E-63847IPR000047Helix-turn-helix motif
PROSITE patternPS0002704265IPR017970Homeobox, conserved site
PRINTSPR000312.2E-64763IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MTMKKSNHNK NSQRRFSEEQ IKSLEMMFES ETKLEPRKKV QLARELGLHP RQVAIWFQNK  60
RARWKSKEGC R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00064.1_g00008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0058191e-66AC005819.3 Arabidopsis thaliana chromosome 2 clone T3A4 map CIC06C03, complete sequence.
GenBankAY0458261e-66AY045826.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-7 (At2g46680) mRNA, complete cds.
GenBankAY0913641e-66AY091364.1 Arabidopsis thaliana putative homeodomain transcription factor protein ATHB-7 (At2g46680) mRNA, complete cds.
GenBankCP0026851e-66CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankX670321e-66X67032.1 A.thaliana mRNA Athb-7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433939.14e-38PREDICTED: homeobox-leucine zipper protein ATHB-7
SwissprotP468974e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A078HUR35e-36A0A078HUR3_BRANA; BnaC04g00750D protein
TrEMBLA0A0D3BNR55e-36A0A0D3BNR5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BN395e-36A0A3P6BN39_BRAOL; Uncharacterized protein
STRINGBo4g007060.18e-37(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17513810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-39homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]