PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00066.1_g00031.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 180aa    MW: 20951.6 Da    PI: 8.0276
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00066.1_g00031.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000282042123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C  C + Fs+   L  H++ H
  Rsa1.0_00066.1_g00031.1 20 YICDFCERGFSNAQALGGHMNIH 42
                             89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-71746No hitNo description
Gene3DG3DSA:3.30.160.605.2E-61844IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1772047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MNRKYLARRP YSWSGQSRPY ICDFCERGFS NAQALGGHMN IHRKDRAKLR EANLKEDRED  60
SICSSSRTRF QQQDLIELPF FVDKISTTRK EDNDKSGDYL GDEEEKKIRL FRKALSQRAE  120
VIDLELRLGL DPYKKSPILS VLEMEQQVMY TTTNKPWDPA GTATAKTPYK DSYDIDGEIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00066.1_g00031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490483.15e-98PREDICTED: transcriptional regulator TAC1
TrEMBLA0A078K0251e-77A0A078K025_BRANA; BnaAnng39470D protein
TrEMBLA0A397Y1D81e-77A0A397Y1D8_BRACM; Uncharacterized protein
TrEMBLM4CS371e-77M4CS37_BRARP; Uncharacterized protein
STRINGBra007029.1-P2e-78(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.16e-71C2H2 family protein