PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00067.1_g00044.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 571aa    MW: 64033 Da    PI: 4.7568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00067.1_g00044.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS435.53.8e-1332015713374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ ly+al+++e +   ++e+laa+++++ev+
  Rsa1.0_00067.1_g00044.1 201 QILISCARALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPP---TDERLAAMQVLFEVC 283
                              78*****************************************************************9...9************** PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAee 171
                              P++kf++l+aN aI e++ gee+vHiiDfdi+qG Q+++L+++ ++ p +g p+lR+Tgv++pes+  s   l+ +g rL+++A+ 
  Rsa1.0_00067.1_g00044.1 284 PCFKFGFLAANDAIIESIRGEEEVHIIDFDINQGNQYMTLIRTVSELPcKGRPRLRLTGVDDPESVqrSVGGLRIIGLRLEQLAKD 369
                              ************************************************9***************9989999*************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                               gv+fef++ va++++ +++++L +k+gE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F++rf
  Rsa1.0_00067.1_g00044.1 370 HGVSFEFKA-VASKTNIVSPSTLGCKQGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFTRF 454
                              *********.7*************************************************************************** PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              +ea eyysa+fdsl+++lpres+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+p p+s ++a++++ l++k
  Rsa1.0_00067.1_g00044.1 455 MEAYEYYSAVFDSLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFSPRPMSGRVASNIQNLIKK 540
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +   y++ ee g+l ++W+d++L+++SaWr
  Rsa1.0_00067.1_g00044.1 541 DYCSKYTLREEMGELHFCWEDKSLIVASAWR 571
                              **666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.211173551IPR005202Transcription factor GRAS
PfamPF035141.3E-130201571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSLVRSAELS AAAAYRNPKL YSLNENNGYN TSSGGGTTSV EIFDPDRSKN TCLTDDSYPS  60
QSYEKYFLDS PTTDEFAQQQ HPVGSGGASV SSFESFPYQS RPVLGCSMEY QLPFGGYQAG  120
GLSPTSMEFD DEQMRSKIQE LERALLSDDD DKMEGLDQLM EIDNEWSSYQ KHHDSPKESS  180
SEDSNSHASS KEVVSSQTPK QILISCARAL SEGKSEEALS MVNELRQIVS IQGDPSQRIA  240
AYMVEGLAAR MAASGKFLYR ALKCKEPPTD ERLAAMQVLF EVCPCFKFGF LAANDAIIES  300
IRGEEEVHII DFDINQGNQY MTLIRTVSEL PCKGRPRLRL TGVDDPESVQ RSVGGLRIIG  360
LRLEQLAKDH GVSFEFKAVA SKTNIVSPST LGCKQGETLI VNFAFQLHHM PDESVTTVNQ  420
RDELLHMVKS LNPKLVTVVE QDVNTNTSPF FTRFMEAYEY YSAVFDSLDM TLPRESQERM  480
NVERQCLARD IVNIVACEGE ERIERYEVAG KWRARMMMAG FSPRPMSGRV ASNIQNLIKK  540
DYCSKYTLRE EMGELHFCWE DKSLIVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5720657025377Protein SCARECROW
5b3h_D2e-5720657025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00067.1_g00044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435602.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A078IH380.0A0A078IH38_BRANA; BnaA06g15170D protein
STRINGBo5g034360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]