PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00069.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 327aa    MW: 37370.4 Da    PI: 6.5822
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00069.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.25e-12188213126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              y   +C+++ +tG+C yGd+CkF H+
  Rsa1.0_00069.1_g00009.1 188 YQPDICKDYKETGYCGYGDSCKFLHD 213
                              67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9186219IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8187214IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009187215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-13188218IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.5E-13252305IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.0E-8263305No hitNo description
SuperFamilySSF578505.05E-13263306No hitNo description
SMARTSM001846.4E-5264301IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.601264302IPR001841Zinc finger, RING-type
CDDcd001622.33E-8264305No hitNo description
PROSITE patternPS005180279288IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSDSGEESQQ QEYLSQQVCT FFKKPSEAKN IRKRRLDADE EEEDGYSKRG SSVLNNLKKV  60
AKPDSKLFFS SGPSTREAPE RPVFHYDSSK EIQVQNDSRA TATLETETDF NQDARAIRER  120
VLKRAADEAL KGNKNKASDQ ELYTGIHGYK DHKAGFRREQ TISSEKAGGS HGPLRASAHI  180
RVSARFDYQP DICKDYKETG YCGYGDSCKF LHDRGDYKPG WQIEKEWEEA EKVRKRNKAM  240
GVEDDDDDDG NNSEEDEDAL PFACFICREA FVDPVVTKCK HYFCEHCALK HHTKNTKCFV  300
CNQPTMGIFN AAHEMKKRMA EERSKAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-6297327113325RING finger protein 113A
5z58_M2e-6297327113325RING finger protein 113A
6ff4_t2e-6297327113325RING finger protein 113A
6ff7_t2e-6297327113325RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00069.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489508.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGXP_006305264.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06420.20.0C3H family protein