PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00071.1_g00054.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 115aa    MW: 12809.5 Da    PI: 10.9911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00071.1_g00054.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-09534130
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                             +++WT+eE+  l+ +v ++G+  W+tI + 
  Rsa1.0_00071.1_g00054.1  5 KQKWTPEEEAALKAGVLKHGTSKWRTILSD 34
                             79*************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.326160IPR017930Myb domain
SuperFamilySSF466892.85E-11251IPR009057Homeodomain-like
PfamPF002491.3E-6533IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-11551IPR009057Homeodomain-like
CDDcd116606.90E-13650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGTPKQKWTP EEEAALKAGV LKHGTSKWRT ILSDPHFTSL LNSRSNVDLK KAKLALKRAL  60
PPPKHDHDGN NNNNNTRALT IVPLANEEER TNPTSPRTHA SKKSITRYKV HANSS
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00071.1_g00054.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895261e-46AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112207.12e-49PREDICTED: telomere repeat-binding factor 2-like
RefseqXP_009112208.12e-49PREDICTED: telomere repeat-binding factor 2-like
SwissprotQ9FJW51e-31TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A397Y1Y85e-48A0A397Y1Y8_BRACM; Uncharacterized protein
TrEMBLM4F9S65e-48M4F9S6_BRARP; Uncharacterized protein
STRINGBra037839.1-P8e-49(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16580812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.23e-25MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]