PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00071.1_g00058.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 236aa    MW: 25584 Da    PI: 7.587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00071.1_g00058.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-0591113123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ykC+ CgksFs+   L  H  +H
  Rsa1.0_00071.1_g00058.1  91 YKCTVCGKSFSSYQALGGHKTSH 113
                              9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-990113No hitNo description
PfamPF139122.1E-1391115IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.09491113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.1E-591113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002891113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-9147174No hitNo description
PfamPF139122.0E-10152176IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349152174IPR007087Zinc finger, C2H2
SMARTSM003550.82152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MALETLNSPT SATATARPFL RYREEMEPEN LEQWAKRKRT KRQRFDQTHH NQETTPSEEE  60
YLALCLLMLA RGSAVQSPLP PSLPSSAHRG YKCTVCGKSF SSYQALGGHK TSHRKPVNNT  120
DNVLSNQEPF NNNTHRNSNG GSVVISQSGK SHTCSICFKS FSSGQALGGH KRCHYDGGNN  180
GNGNGSSSNS SVEVVGGSDV SDVDDERSSE EQSATIGGHR GFDLNLPADQ VTVVIT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00071.1_g00058.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895260.0AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454709.11e-177PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW11e-103AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A397XRZ91e-129A0A397XRZ9_BRACM; Uncharacterized protein
TrEMBLA0A3P5XVL41e-129A0A3P5XVL4_BRACM; Uncharacterized protein
TrEMBLM4F9T11e-129M4F9T1_BRARP; Uncharacterized protein
STRINGBra037845.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.13e-91zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]