PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00073.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 257aa    MW: 29748.7 Da    PI: 9.5165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00073.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1371120153
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                              +r++h ++Er+RR+++N+ ++ L+ ++P +   +s++ + a+i e +++Y+k+
  Rsa1.0_00073.1_g00024.1  71 QRMNHIAVERNRRRQMNHFLSILKAMMPLS---YSQRSDQASIIEGTINYLKK 120
                              79****************************...******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-1068125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.17E-1368126No hitNo description
SuperFamilySSF474598.77E-1669139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.72970121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1171120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-976127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MIFQQAYPYD FSLDKTSSSY EVLDYNIAEQ QSLSTENLSS VQARGGFGQE PPRKKRKRRR  60
SEQRIEEKEN QRMNHIAVER NRRRQMNHFL SILKAMMPLS YSQRSDQASI IEGTINYLKK  120
QEQLLQSSEA QLKPTKPHQL TNIFSDFFNF PQYSTANASS RHHHNGLAVV AEVEVTMVEM  180
HANIKVLTKT RPRLLFKMIN EFDSLGLIIF HLNLTASNNM SLFTFSVKVD EDCHLTTTAN  240
EVAHAVHEVV SRIHKEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257RKKRKR
25358KKRKRR
35359KKRKRRR
45459KRKRRR
55559RKRRR
65560RKRRRS
77182RMNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00073.1_g00024.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437026.10.0PREDICTED: transcription factor bHLH99
SwissprotQ9FKQ61e-102BH099_ARATH; Transcription factor bHLH99
TrEMBLA0A0D2ZQ381e-152A0A0D2ZQ38_BRAOL; Uncharacterized protein
TrEMBLA0A398AJX81e-152A0A398AJX8_BRACM; Uncharacterized protein
STRINGBo00615s100.11e-153(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149591619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65320.11e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]