PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00077.1_g00030.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 465aa    MW: 51976.7 Da    PI: 6.0912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00077.1_g00030.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12318364455
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI ++q
  Rsa1.0_00077.1_g00030.1 318 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 364
                              799***********************66......***************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-3949226IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.44E-17314380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.234314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.44E-14317368No hitNo description
PfamPF000104.1E-10318364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17318380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVHQKFWENQ EDRAMVESTI GTEACDFFIS SASSLTKLLL PPPPTDPNLQ QGLRHVVEGS  60
DWDYAVFWLA SNANSSDGCV LIWGDGHCRA VKGSPGDDQD ETKRRVLGKL RSSFIGPDEG  120
EEDHHRLVKS GPLTDFDMFY LASLYFSFRC DSNKYGPAGT YVSGKPLWAA DLPSCLSYYR  180
VRSFLARSAG FKTVLSVPVN CGVVELGSLK LIPEDKSVIE MVKSVFGGSD FVQAKEAPKI  240
FGRQLSLGAS KPRSMSINFS PKMEDESGFS LEPYEVVQAN QVYGYEQGKD EAALYLTDEQ  300
KPRKRGRKPA NGREEALNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLADAITYI  360
TDMQKKIRVY ETEKQVMKRR ESNQITPAEV DFQQREDDAV VRVSCALENH PVSKVVQVFK  420
ENEVTPHDAN VAVTEEGVVH TFTLRPQGGC TAEELKDKLL ASLAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-26312395281Transcription factor MYC2
5gnj_B3e-26312395281Transcription factor MYC2
5gnj_E3e-26312395281Transcription factor MYC2
5gnj_F3e-26312395281Transcription factor MYC2
5gnj_G3e-26312395281Transcription factor MYC2
5gnj_I3e-26312395281Transcription factor MYC2
5gnj_M3e-26312395281Transcription factor MYC2
5gnj_N3e-26312395281Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00077.1_g00030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471105.10.0PREDICTED: transcription factor bHLH3
SwissprotO234870.0BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A078H4030.0A0A078H403_BRANA; BnaA01g17420D protein
STRINGBra038458.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]