PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00080.1_g00024.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 245aa    MW: 25548.5 Da    PI: 10.0972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00080.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-11214239127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ykt+ C +f++ G C +GdrC+FaHg+
  Rsa1.0_00080.1_g00024.1 214 YKTKMCERFSK-GNCTFGDRCHFAHGE 239
                              9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035613562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.33563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-63662IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-73760IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.34E-15104186IPR004088K Homology domain, type 1
SMARTSM003221.8E-11114184IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.1E-16114183IPR004088K Homology domain, type 1
PROSITE profilePS5008414.55115179IPR004088K Homology domain, type 1
CDDcd001051.98E-13117179No hitNo description
PfamPF000134.7E-12117181IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.3E-16208243IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6213239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-9213243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.037213240IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7214239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDARKRGRPE AAGSFNNSNG GGFKKSKQEM ESGLGSKSKP CTKIFSTSGC PFGENCHFLH  60
YVPGGYNPVS QMTNMGSPMS QVSRNMQGSG GGGGGGRFTG RGESGPGHVS SFGASATAKI  120
SVDASLAGAI IGKGGVSSKQ ICRQTGAKLS IQDHERDPNL KNIELEGTFE QINEASAMVR  180
ELIGRLNSAS RRPPGVGGGG GLGSEGKPHP GSNYKTKMCE RFSKGNCTFG DRCHFAHGEA  240
ELRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00080.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535310.0AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486208.11e-177PREDICTED: zinc finger CCCH domain-containing protein 36 isoform X1
SwissprotQ9C7C31e-139C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLD7KZP61e-146D7KZP6_ARALL; KH domain-containing protein
STRINGfgenesh1_pm.C_scaffold_30010101e-147(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-111C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]