PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00087.1_g00057.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 436aa    MW: 47580.7 Da    PI: 4.7713
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00087.1_g00057.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.24.7e-37123222298
                   DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 
                              lfqrlw++eDei lL+G++d+ ++++g+++s+  d+  fye +k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++h
  Rsa1.0_00087.1_g00057.1 123 LFQRLWTDEDEIELLRGFLDYvTSHRGSNSSHppDTAPFYELIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPH 208
                              79*******************8899999665558**************************************************** PP

                   DUF573  85 dqkifelskkiWgs 98 
                              dq++fe+s+kiW++
  Rsa1.0_00087.1_g00057.1 209 DQSTFEISRKIWNQ 222
                              ************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-33124221IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTSDQRDAVF SIESPDLEEV GAGDGGGGDS DTDEDLHDAA IPETNEDPED DDPDEEDPTT  60
AAVVASSSTD AVTVALPAGS AVPVSVIPVD SDPKWHRTTE IVHHHHHNNQ RMLPPPIDDS  120
RRLFQRLWTD EDEIELLRGF LDYVTSHRGS NSSHPPDTAP FYELIKSKLQ LEFNKNQLVE  180
KLRRLKKKYR NVMSKISSGK EVFFKSPHDQ STFEISRKIW NQTGKIIGFE DNNVMDFEET  240
NANTTNGNYF NSPGGSNPIE VDSENGVERR LTMSSGGGSR KRSRSRIGKI EEDSKPVIDG  300
NIPNTAAAAS NVNLNEPATA VIGGNIGVLI EETVKSCVSP LIKEMMNGTT SMMMAAMGGG  360
GGVGGGHGHG FGSLSPMFTR PLGYGVEGGG GNKAVNDERW RKQQILELEV YSRRLELVQE  420
QIRATLHELK TMPSGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280285KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00087.1_g00057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491332.10.0PREDICTED: probable transcription factor At3g04930
SwissprotQ9CAV70.0STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A397ZHN90.0A0A397ZHN9_BRACM; Uncharacterized protein
STRINGBra040416.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-147DNA-binding storekeeper protein-related transcriptional regulator