PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00087.1_g00080.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WRKY

Protein Properties

Length: 317aa MW: 35329.4 Da PI: 9.5849

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00087.1_g00080.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.3	1e-30	250	307	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++++++++tYegeHnh+ Rsa1.0_00087.1_g00080.1 250 DEYTWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCIDETSMLIVTYEGEHNHS 307 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.9E-15	213	246	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.2E-33	236	307	IPR003657	WRKY domain
PROSITE profile	PS50811	29.31	243	309	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-26	246	307	IPR003657	WRKY domain
SMART	SM00774	1.3E-36	248	308	IPR003657	WRKY domain
Pfam	PF03106	2.1E-26	250	306	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MEEVEAASKL AIESCHGVLR LFSQQQTSCD AKSLMVETRE AVSKFKRVAS LLTKWSSGHG 60 KFRRINNKFK PSFPQHIFLE STVCCCNDTD YTQVLAPEPL QMVPASVASY DEIDPRHQLS 120 HPLSQKMCAE KPFLELKPPP FLAPYQLIAY SRSNSGGVNL KFDGSGSSFY TPSASNGSRS 180 FVSSLSMDTS VVDYDGNSFQ LTGLSRKMCS GSLKCGSRSK CHCSKKRKLR VKRSIKVPAI 240 SNKIADIPPD EYTWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERCI DETSMLIVTY 300 EGEHNHSRIL SSQSAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	241	306	7	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00087.1_g00080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ210290	1e-180	FJ210290.1 Brassica napus cultivar Westar WRKY transcription factor 39 (WRKY39) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486727.1	0.0	PREDICTED: probable WRKY transcription factor 39
Swissprot	Q9SR07	0.0	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	A0A3P6F4I2	0.0	A0A3P6F4I2_BRAOL; Uncharacterized protein
STRING	XP_006408166.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-157	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]