PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00092.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 314aa    MW: 34849.4 Da    PI: 4.7833
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00092.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.5e-18214248135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Rsa1.0_00092.1_g00014.1 214 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 248
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.7E-982303IPR016679Transcription factor, GATA, plant
SMARTSM004011.3E-17208258IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358208244IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-15211272No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14212246IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.22E-15213260No hitNo description
PfamPF003201.1E-15214248IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214239IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQQQQQPPT PELLLVAGNA DSFVVDDLLD FSNDNGQPED VFESSPDSSV VSAGTLADSS  60
NSSSLFTDGS SFSDDLCVPC EDLAELEWLS NFVEESFSKE DQDKLQLLSG LQKPQTTGLT  120
QTYQTKPEPE PEPELDQIFI LTDTDDSNVS FPAKARSKRS RSAASTWASR LLALAGGSDE  180
PFPKKKQHHR VIKEHDFAGE TDGDSGEAGG ERRCLHCATD KTPQWRTGPM GPKTLCNACG  240
VRYKSGRLVP EYRPASSPTF VTARHSNSHR KVMELRRQKE MRDEHLLSQL RSNGEDFLIH  300
CNNNHVAPDF RHLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00092.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895651e-141AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480784.10.0PREDICTED: GATA transcription factor 9-like
SwissprotO826321e-162GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A0D3DHE10.0A0A0D3DHE1_BRAOL; GATA transcription factor
TrEMBLA0A3P6E9790.0A0A3P6E979_BRAOL; GATA transcription factor
STRINGBo7g115890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-124GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]