PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00099.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 212aa    MW: 23605.5 Da    PI: 3.8664
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00099.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.6e-1314102192
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 
                              ffkv +p d++    l +p +f  ++ ++k  +  +++++  g+ W++kl  rk+ g    + + +GWk+ vk+ +Lk g+f+ F+
  Rsa1.0_00099.1_g00007.1  14 FFKVYLPDDSGD--DLDIPISFN-SY-LPKSLPEYIIVRSIYGNIWKLKL--RKRCGNvekISMVNGWKRIVKDEDLKGGEFLGFE 93 
                              788886666554..59******8.77.45668889***************..4444444559999********************* PP

                              E-SSSEE.. CS
                       B3  84 ldgrsefel 92 
                              +dg++ f++
  Rsa1.0_00099.1_g00007.1  94 FDGSRLFNF 102
                              998666643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-167107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-187110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.40612108IPR003340B3 DNA binding domain
CDDcd100172.18E-1512105No hitNo description
PfamPF023626.5E-1114102IPR003340B3 DNA binding domain
SMARTSM010195.2E-1414108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MNKGDSSDDC IPKFFKVYLP DDSGDDLDIP ISFNSYLPKS LPEYIIVRSI YGNIWKLKLR  60
KRCGNVEKIS MVNGWKRIVK DEDLKGGEFL GFEFDGSRLF NFCIYGHATC KRLGNSVKTK  120
ESKDGSESAD IIVIDDDDDD DDDDDNQDSG DEDIVVIDDD SSNDVSSGQG SGMEDQSTKD  180
IIVIDEDSSD GDYTDADEDD DGRSGVETEL RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-1541101104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00099.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455147.11e-115PREDICTED: B3 domain-containing protein At5g60142-like
SwissprotQ9LST32e-62Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLA0A397XS612e-90A0A397XS61_BRACM; Uncharacterized protein
STRINGBo9g141120.13e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.12e-63B3 family protein