PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00101.1_g00019.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 382aa    MW: 42240.6 Da    PI: 7.9104
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00101.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.14.8e-32155254298
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfske 83 
                              lfqrl+se+Dei++LqG++df++++g +p++++daf+++vk  i+f++sk q+v+K++r KkKf + vk+     k++++++ +k+
  Rsa1.0_00101.1_g00019.1 155 LFQRLFSETDEIAMLQGFLDFTSTKG-DPYENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFANIVKNalkkGKTEDKITCAKD 239
                              69************************.9*************************************999888777899999****** PP

                   DUF573  84 hdqkifelskkiWgs 98 
                               dqk+fels+kiWgs
  Rsa1.0_00101.1_g00019.1 240 LDQKAFELSRKIWGS 254
                              *************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-26156253IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAPKQADKIE NPPVASSSEE EEEEESGSSG EASESSDDEA GDVQSKLTQK PAAPPASAKK  60
PQSDSEEGET ESESDSDSEP ATKTKPLNTV ATKPIPPESS TAAKRSLKQA DNNEPKKKAK  120
TSSTTEQVKK KKPTTTTKDE DVKKKISGEE AKKMLFQRLF SETDEIAMLQ GFLDFTSTKG  180
DPYENMDAFC DYVKTLIDFN ASKAQIVTKL QRCKKKFANI VKNALKKGKT EDKITCAKDL  240
DQKAFELSRK IWGSDGVLPA KARKKKLSKE DELLSTSPKK EVVEVKKTQK VVNAVVVDTH  300
HLSESREMGL FFKAENASVL GLDEFTVSEV WDRVEDGGKK REMEEKLKKL RAKQMELCLQ  360
RTALVDYTAK IIFKNNAPST SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120PKKKAKT
2115131KKKAKTSSTTEQVKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00101.1_g00019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466313.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-97STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A3P6ESH61e-172A0A3P6ESH6_BRAOL; Uncharacterized protein
STRINGBo7g110050.11e-172(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-77DNA-binding storekeeper protein-related transcriptional regulator