PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00101.1_g00036.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 188aa    MW: 20505.4 Da    PI: 7.5101
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00101.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.4e-102978253
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                             +  h  +Er+RR+++ + f+ Lr++lP       ++K   +e +  Av++Ik+
  Rsa1.0_00101.1_g00036.1 29 KLLHRDIERQRRQEMATLFASLRDHLPLqY---IKGKRAVSEHVSGAVNFIKD 78
                             6679************************66...9999999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-122497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.13E-82578No hitNo description
PROSITE profilePS5088811.7572779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-72978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-82997IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPLIVSAGDG GSGGSDIPQR TVDNKQKKKL LHRDIERQRR QEMATLFASL RDHLPLQYIK  60
GKRAVSEHVS GAVNFIKDTE TRIKELSARR DELSRETCYK SNPDLAGTAS ELGNSVPASV  120
LVQPCVSGFE VVVSSNSLGP QALPLSRVLE VLQELGLEVI SSLTTRVNES LIHTIRVEVN  180
SFGCLDLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00101.1_g00036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481571.11e-134PREDICTED: transcription factor bHLH126-like
SwissprotQ9STJ64e-86BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A078IIE71e-111A0A078IIE7_BRANA; BnaA03g47380D protein
TrEMBLA0A3P5ZT971e-111A0A3P5ZT97_BRACM; Uncharacterized protein
STRINGBo7g110290.11e-110(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.13e-80bHLH family protein