PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00104.1_g00055.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 60aa MW: 6855.67 Da PI: 10.9631

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00104.1_g00055.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	17	43	14	42
HHHHHHHHHHHCTSCC.C...TTS-STCHH CS HLH 14 driNsafeeLrellPk.askapskKlsKae 42 d+iN+ + +L++llP+ + +s++ +Ka+ Rsa1.0_00104.1_g00055.1 17 DQINDLIIKLQQLLPElR---NSRRSDKAS 43 79**************55...888899986 PP

Sequence ? help Back to Top
Protein Sequence Length: 60 aa Download sequence Send to blast
MSGRRSRSRQ SSGISEDQIN DLIIKLQQLL PELRNSRRSD KASFSIESVT RDVQLHKESA

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor required for MONOPTEROS-dependent root initiation in embryo. Promotes the correct definition of the hypophysis cell division plane. Transcriptionally controlled by MONOPTEROS. Moves from its site of synthesis in pro-embryos cells into the hypophysis. Regulates brassinosteroid (BR) signaling by sequestering negative BR signaling components. May function as positive regulator of gibberellin signaling. May play a role in the regulation of light signaling and possibly auxin signaling. {ECO:0000269\|PubMed:16527868, ECO:0000269\|PubMed:20023194, ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:22339648}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00104.1_g00055.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by exogenous gibberellin. {ECO:0000269\|PubMed:16527868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189574	6e-53	AC189574.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011B08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013591036.1	2e-16	PREDICTED: transcription factor PRE3-like
Refseq	XP_013681754.1	2e-16	transcription factor PRE3
Refseq	XP_013726392.1	2e-16	transcription factor PRE3-like
Swissprot	Q9CA64	1e-11	PRE3_ARATH; Transcription factor PRE3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74500.1	1e-12	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Lu KJ,De Rybel B,van Mourik H,Weijers D Regulation of intercellular TARGET OF MONOPTEROS 7 protein transport in the Arabidopsis root. Development, 2018. [PMID:29358212] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]