PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00108.1_g00039.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 189aa    MW: 21378.3 Da    PI: 9.4231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00108.1_g00039.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-101663555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              + +E++RR +++  ++eL +llP+    + + l   + L +A +YIk+Lq
  Rsa1.0_00108.1_g00039.1 16 RKTVEKNRRIQMKALYSELNSLLPQT---SRESLALPDQLDEAANYIKKLQ 63
                             5789*********************9...8999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.51E-4366No hitNo description
PROSITE profilePS5088810.7281162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.43E-91677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-81677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00471768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-61763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDQRRSNANQ SRSTDRKTVE KNRRIQMKAL YSELNSLLPQ TSRESLALPD QLDEAANYIK  60
KLQVNVEKKK ERKRKLVATS AFEKLNSTGS SSMSSSVDVS VLRKLPRIEI QETGPVLHIF  120
LVTSLEHKFM FHEITRVITE ESGAEITHAG YSIVDDAVFH TIHCKLEDCD YGAGSRISES  180
LKKLVNTVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16675EKKKERKRKL
26875KKERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00108.1_g00039.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936861e-139AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468619.11e-138PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ71e-90BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A398ASR31e-114A0A398ASR3_BRACM; Uncharacterized protein
TrEMBLM4DAH61e-114M4DAH6_BRARP; Uncharacterized protein
STRINGBra013486.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-85bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]