PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00110.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 258aa    MW: 29020.6 Da    PI: 6.79
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00110.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.53.6e-1329113286
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                              W+++ + +Liea  ++  +l+rg+l++++W+ev++++        +g  ++ +qCk++++ l+k+yk +k+          s++ +
  Rsa1.0_00110.1_g00008.1  29 WSEDATATLIEAWGDRYVNLSRGNLRQNDWREVADAVnsihggGGGGRPKTDVQCKNRIDTLKKKYKTEKAKPCP------SSWCF 108
                              ****************************************99999999*******************99987664......35888 PP

                 trihelix  82 fdqle 86 
                              f++l+
  Rsa1.0_00110.1_g00008.1 109 FERLD 113
                              88886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2427114No hitNo description
SMARTSM005956.6E-436120IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
METTPETQPK SQSQTGSSHR LPPGREDWWS EDATATLIEA WGDRYVNLSR GNLRQNDWRE  60
VADAVNSIHG GGGGGRPKTD VQCKNRIDTL KKKYKTEKAK PCPSSWCFFE RLDFLIGPVA  120
AKKCTGVVRP AVVKNPTGSK SSGSSLDDED EEEEDDEVGD WGFVVRKHRR VEDVYPSGGE  180
GSSSRELARA ILKLGEVYER IEGAKQRMMV ELEKQRMEAA KELELQRMNM LMDMQMEIER  240
SKLGKRRAVA ASDKKLSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00110.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892531e-109AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence.
GenBankAC1895461e-109AC189546.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004M10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436578.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A078HEW51e-144A0A078HEW5_BRANA; BnaA01g31020D protein
STRINGBra034165.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-118sequence-specific DNA binding transcription factors