PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00110.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 288aa    MW: 32377.6 Da    PI: 4.3765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00110.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1879129155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  Rsa1.0_00110.1_g00012.1  79 CSYRGVRQRV-WGKWVAEIREP---N-RvSRLWLGTFPTAEEAASAYDEAARVMYG 129
                              67******99.**********8...2.58**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-3179139No hitNo description
PfamPF008471.5E-1279129IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2180138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3280138IPR001471AP2/ERF domain
PROSITE profilePS5103222.49780137IPR001471AP2/ERF domain
SMARTSM003801.7E-3780143IPR001471AP2/ERF domain
PRINTSPR003671.6E-108192IPR001471AP2/ERF domain
PRINTSPR003671.6E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MAIYEQTGTD TSSLSLSSSK KRKSRSRADG TTVADRLKKW KQYNDTVEQG ENKRRRKVPA  60
KGSKKGCMKG KGGPENTQCS YRGVRQRVWG KWVAEIREPN RVSRLWLGTF PTAEEAASAY  120
DEAARVMYGP SARLNFPQQC VDNSEFLAST SSQSEVCSVE DKPVLGGDVC VTRDDTRMSS  180
DLLDEFDEEY WGRVSEEIEK SMEEGEEEVL TVADYGWCND MLNEQDLWDP NEVFDVDELL  240
GDIDECMLTG TGPDEGQNRI HPGGSDPHPL QLEPHNGHEF FDLDSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1781137360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00110.1_g00012.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436576.11e-163PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821332e-95DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A078JJU11e-155A0A078JJU1_BRANA; BnaAnng23490D protein
STRINGBo1g141310.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.13e-80DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]