PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00116.1_g00048.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 225aa    MW: 25188.1 Da    PI: 10.8559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00116.1_g00048.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-1165110354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+ +ErrRR riN  fe Lr+ lP++        +Ka++L ++v+Y k+L
  Rsa1.0_00116.1_g00048.1  65 KKHSDAERRRRLRINCQFEALRTTLPNL------IKDKASVLIETVRYFKEL 110
                              68*************************9......899*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-1153117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.51862110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-965110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.15E-865114No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1066114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-868116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.6E-4137202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVLLQHLEQG MRPLSQRYNA TAYSTTMGRN FFTTGPASSN LFSSRGYSAN TKPKSKTESK  60
EVAAKKHSDA ERRRRLRINC QFEALRTTLP NLIKDKASVL IETVRYFKEL RKLVNEIPTT  120
PSLEDSLRLG QCKNRDFARV VFSCSDREGL MSEVAESMKA VKAKAVRAEM MTVGGRTKCV  180
LFVQGVNGNE GLVKLKKALK PVVNRKPEAK DNSSSGRSLM LPQQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00116.1_g00048.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448366.11e-162PREDICTED: transcription factor bHLH131
SwissprotP0CB251e-105BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A078ISV31e-136A0A078ISV3_BRANA; BnaC03g61070D protein
TrEMBLM4D2D51e-141M4D2D5_BRARP; Uncharacterized protein
STRINGBra010635.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.19e-99bHLH family protein