PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00118.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 585aa    MW: 64008.1 Da    PI: 5.561
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00118.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS441.46.4e-1352205801374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              lv++L++cAeav+sgdl+la+al++++  la +++ +m+++a+yf+eALa+r++r         pp+++ +++ s++l++   f+e
  Rsa1.0_00118.1_g00012.1 220 LVHALMACAEAVQSGDLSLAEALVKQIGFLAVSQAGAMRKVATYFAEALARRIYR-------LSPPRTQVDHSLSDALQM--HFYE 296
                              689****************************************************.......235555554445555444..4*** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              ++P+lkf+h+taNqaIlea+eg+erv +iDf+++qGlQWpaL+qaLa R++gpp +R+Tg+g+p++++++ l+e+g +La++Ae++
  Rsa1.0_00118.1_g00012.1 297 TCPYLKFAHFTANQAILEAFEGKERVRVIDFSMNQGLQWPALMQALAVREGGPPVFRLTGIGPPAADNSDHLHEVGCKLAQLAEAI 382
                              ************************************************************************************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +v+fe++ +va++l+dl+ ++L+++p   Ea+aVn+v++lh+ll +++ +e+    vL +vk+++P +++vveqe++hn++ Fl+r
  Rsa1.0_00118.1_g00012.1 383 QVKFEYRGFVANSLADLDASMLELRPseTEAVAVNSVFELHKLLGRPGGIEK----VLGVVKQIKPVIFTVVEQESSHNGPVFLDR 464
                              *************************9999*******************9999....****************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+e+l+yys+lfdsle      s++++++++++lg++i+n+vacega+r+erhetl++W +r++++GF+p++l+++a kqa++ll+
  Rsa1.0_00118.1_g00012.1 465 FTESLHYYSTLFDSLEGV---PSSQDKVMSEVYLGKQICNLVACEGADRVERHETLSQWANRFGSSGFSPAHLGSNAFKQASMLLA 547
                              ***************998...69999************************************************************ PP

                     GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  Rsa1.0_00118.1_g00012.1 548 LFNgGEGYRVEENNGCLMLGWHTRPLITTSAWK 580
                              ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.0E-3847120No hitNo description
PfamPF120419.9E-3547114IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.078194559IPR005202Transcription factor GRAS
PfamPF035142.2E-132220580IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MKRDLHHFQG PDTRFPNHNH GTTANTGSSK DKNMMMVKEE EDGGNMDELL AVLGYKVRSS  60
EMAEVALKLE QLETMMGTVQ EDGLSNLATD TVHYNPSELY SWLDNMLTEF NPPQPPPPPE  120
INSSFLTGAG GSDYDLKAIP GNAIYARSNN HFPIDSSSSS SNQAGDNSQN KRLKSCSSPD  180
SLVTTTTTIT TESTRPVTLA ATESTRSMVL VDSQENGVRL VHALMACAEA VQSGDLSLAE  240
ALVKQIGFLA VSQAGAMRKV ATYFAEALAR RIYRLSPPRT QVDHSLSDAL QMHFYETCPY  300
LKFAHFTANQ AILEAFEGKE RVRVIDFSMN QGLQWPALMQ ALAVREGGPP VFRLTGIGPP  360
AADNSDHLHE VGCKLAQLAE AIQVKFEYRG FVANSLADLD ASMLELRPSE TEAVAVNSVF  420
ELHKLLGRPG GIEKVLGVVK QIKPVIFTVV EQESSHNGPV FLDRFTESLH YYSTLFDSLE  480
GVPSSQDKVM SEVYLGKQIC NLVACEGADR VERHETLSQW ANRFGSSGFS PAHLGSNAFK  540
QASMLLALFN GGEGYRVEEN NGCLMLGWHT RPLITTSAWK LSAGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6121557914378Protein SCARECROW
5b3h_A1e-6121557913377Protein SCARECROW
5b3h_D1e-6121557913377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00118.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3319250.0AB331925.1 Brassica rapa var. perviridis BrGAI mRNA for GRAS family transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456905.10.0PREDICTED: DELLA protein RGA2
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A397XWC50.0A0A397XWC5_BRACM; Uncharacterized protein
STRINGBo9g070200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein