PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00118.1_g00022.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HD-ZIP

Protein Properties

Length: 122aa MW: 13927.6 Da PI: 9.2425

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00118.1_g00022.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	62	114	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ Rsa1.0_00118.1_g00022.1 62 RKKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRAR 114 78889***********************************************9 PP
2	HD-ZIP_I/II	83.1	4.1e-27	62	119	1	58
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkq 58 +kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR kq Rsa1.0_00118.1_g00022.1 62 RKKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARNGPKQ 119 69***************************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.64E-18	46	114	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-18	47	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	58	118	IPR001356	Homeobox domain
SMART	SM00389	6.0E-16	60	122	IPR001356	Homeobox domain
CDD	cd00086	2.53E-15	61	119	No hit	No description
Pfam	PF00046	8.1E-16	62	114	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MAILPENSSK LDLTISTPGF SCSPRSDEGS GGEREQLKLD MNRLPSSDED EELSHGGSAP 60 PRKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAEHLMLR PRQIEVWFQN RRARNGPKQG 120 TY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00118.1_g00022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	1e-107	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455112.1	1e-78	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Refseq	XP_018455149.1	1e-78	PREDICTED: homeobox-leucine zipper protein ATHB-17-like
Swissprot	Q8S9N6	1e-64	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A078HWE1	1e-70	A0A078HWE1_BRANA; BnaA09g18620D protein
STRING	Bo2g134170.1	2e-68	(Brassica oleracea)
STRING	Bo9g070030.1	2e-69	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	4e-67	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]