PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00119.1_g00065.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 546aa    MW: 60668.8 Da    PI: 7.0139
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00119.1_g00065.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.63.8e-25324376256
                  G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                              ++++Wt+eLH++Fv+ave+L G + A+P++ilelmkv+gLt+++v+SHLQk+R++
  Rsa1.0_00119.1_g00065.1 324 KKVDWTQELHKKFVQAVEKL-GVD-AIPSRILELMKVDGLTRHNVASHLQKFRMH 376
                              689*****************.887.****************************96 PP
2Response_reg26.53.3e-107917215109
                              HHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEE CS
             Response_reg  15 rqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdfl 98 
                              r+ le+ +y +v++++d +eal  + +++  +++ ++ ++ +  d  e +k ++ ++  lp i++++    +++ +++ +Ga +fl
  Rsa1.0_00119.1_g00065.1  79 RSKLESMDY-IVTTFTDESEALSAVFKSQesFHIAIIEVNTSAED--ESIKFLEVSKGLLPTIMISDDHCITTTMKCIALGAVEFL 161
                              5668999**.*************99555546*********99976..566667677779*************************** PP

                              ESS--HHHHHH CS
             Response_reg  99 sKpfdpeelvk 109
                               Kp +pe+l +
  Rsa1.0_00119.1_g00065.1 162 QKPLSPEKLKN 172
                              ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011018.78764178IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.55E-771177No hitNo description
SuperFamilySSF521722.42E-1073179IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.4E-1176185No hitNo description
PfamPF000729.0E-677172IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129416.181320378IPR017930Myb domain
SuperFamilySSF466894.93E-16322379IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-23322378IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-23324376IPR006447Myb domain, plants
PfamPF002498.4E-8326373IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MRRPLTYEFS LSLLLFIGLL DCEATVTASR SGGVGRENNA KPAMVCTVND LSKWENFPKG  60
LRVLLLHGCG NAISAAETRS KLESMDYIVT TFTDESEALS AVFKSQESFH IAIIEVNTSA  120
EDESIKFLEV SKGLLPTIMI SDDHCITTTM KCIALGAVEF LQKPLSPEKL KNIWQHVVHK  180
AFNDGGASVS ESLKPVKDSV VSMLNLDTNM TIDEKDPAPS TPQLRQVSRL LDQENLNCSV  240
ENVNSPTEKE NTEDHDIGES KLVDTTNHED NVIVKEEKGN SEKEEEQGQT GDSVNFHKKE  300
NESNKPINKS SGTKNLSGNK ASRKKVDWTQ ELHKKFVQAV EKLGVDAIPS RILELMKVDG  360
LTRHNVASHL QKFRMHRRNI LPKEDHNHRW IQSRENHRQI QRQYNGFQQQ HRPVMAYPFW  420
GIPGAVPPSW PPALPSAGQL PPWHCKPAYP TLNGNTWGYP VGPPVTGTFF SHPVTGTFST  480
PPVNQLDEEM IDQVIKEVIS KPGMPLPLGL KPPSAESVIT DLSRRGITAV PSSSSSCLIN  540
GSRRLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14325375758ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00119.1_g00065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477633.10.0PREDICTED: two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A3P6F3020.0A0A3P6F302_BRAOL; Uncharacterized protein
STRINGBra012623.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]