PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00120.1_g00030.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 82aa    MW: 9180.8 Da    PI: 9.4489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00120.1_g00030.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.0005829611652
                             HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                      HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                             i +++  L++++P +    ++   Ka +L k +eY++
  Rsa1.0_00120.1_g00030.1 29 ISKRMTLLQDMVPGC----NRITGKAVMLDKIIEYVS 61
                             6678889*******9....99**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-72962IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-72961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MIKLAAVKNL IEKCDGKCDN KDDAKGKYIS KRMTLLQDMV PGCNRITGKA VMLDKIIEYV  60
SETSRVLFYE AGYYKSQGGV KP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00120.1_g00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606771.19e-15PREDICTED: transcription factor bHLH77-like isoform X1
RefseqXP_013606780.19e-15PREDICTED: transcription factor bHLH77-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2140822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-19bHLH family protein