PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00122.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 377aa    MW: 41629.7 Da    PI: 5.1466
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00122.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573101.47.9e-32154253197
                   DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfsk 82 
                              k+fqrl+se+Dei++L+G++df++++g +p++++daf+++vk+ i+f++sk q+v+K++r KkKf + vk+     k++++++ sk
  Rsa1.0_00122.1_g00008.1 154 KMFQRLFSETDEIAMLRGFLDFTSTRG-DPYENMDAFCDYVKNLIDFNASKAQIVTKLQRCKKKFVNIVKNalkkGKTEDKVTCSK 238
                              58*************************.9************************************9999887777899999***** PP

                   DUF573  83 ehdqkifelskkiWg 97 
                              + dqk+f+ls+kiWg
  Rsa1.0_00122.1_g00008.1 239 DLDQKAFDLSRKIWG 253
                              **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-26156253IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAPKQSDKIE NPPPAASSSE EEEEEESGSS GEEEESGSSD DEAGDVQSKL TQKPPPPATK  60
KTPESDSEED ESESDSDSEP PTKTKPLNTV ASKPKPETSG SASASLPESS TTAKRSLKQA  120
DEEEPKKKAK TTTENVKKKK DEEVKKISGE DAKKMFQRLF SETDEIAMLR GFLDFTSTRG  180
DPYENMDAFC DYVKNLIDFN ASKAQIVTKL QRCKKKFVNI VKNALKKGKT EDKVTCSKDL  240
DQKAFDLSRK IWGANGVLPA KPRKMSSKED VKSPPSPSHT PKKMEKQKGV VVVDDAQLSS  300
SREMAMFFKA ENVSVFGLDE STVSAVWDVV EDGPKKREME EKLKKLKAMQ VELCLQRTAL  360
LDTTAKMIFK DNASSSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124130PKKKAKT
2125139KKKAKTTTENVKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00122.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471910.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-105STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A3P6FL140.0A0A3P6FL14_BRAOL; Uncharacterized protein
STRINGBo1g039870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.15e-79DNA-binding storekeeper protein-related transcriptional regulator