PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00122.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 339aa    MW: 37328.5 Da    PI: 6.5142
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00122.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.16e-19251285135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Rsa1.0_00122.1_g00013.1 251 CSHCGVQKTPQWRAGPKGAKTLCNACGVRYKSGRL 285
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.5E-10015339IPR016679Transcription factor, GATA, plant
SuperFamilySSF577165.23E-14244307No hitNo description
SMARTSM004015.2E-16245299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.189245281IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-15249283IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-14250298No hitNo description
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
PfamPF003206.5E-17251285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MERMEAGLKS SIRQEMALKT TPPPPVYEEF LAVTTAQNDF SSEDFSVDDL LDLSNDDVFA  60
EEEAAEVPKA QQEVVLCVSS EQPNDVEEVL GRTNDFGSLP SNQLPVPMDE LADLEWLSHF  120
VDDSFTEYSA PNLTGTPVEK PAWLTGNRKH PVTPASEESC FKSPFPAKAR SRRNRNGVKP  180
WSLGSSGPSS SSSTSSSSSS SGLSSPWFSG AELLEHDFTS EKPPAPKKHK KRSAESVFSG  240
KFQQQQPQRR CSHCGVQKTP QWRAGPKGAK TLCNACGVRY KSGRLLPEYR PACSPTFSSE  300
LHSNHHRKVI EMRRKKEPTD DSSTGLNQPV KTPQAVPSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00122.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894150.0AC189415.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444819.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH571e-162GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3P6FRS50.0A0A3P6FRS5_BRAOL; Uncharacterized protein
STRINGBo1g039780.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-148GATA transcription factor 5