PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00122.1_g00023.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 510aa    MW: 57863 Da    PI: 9.8651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00122.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-14894196
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                       B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
                             ffk l     + s+ l++p  f++++  g   +e  t +l++  s  +Wevk+  + + +   lt+GWkeF+ a++L+ gD+++F+ +
  Rsa1.0_00122.1_g00023.1  8 FFKPL--LPGFHSH-LTIPVAFFSKYiqG-T-NEYHTAKLRSdASKITWEVKV--EDG-Q--KLTDGWKEFALAHDLRIGDILIFRQE 85
                             66666..5667777.***********743.3.455689999868889******..333.2..4***********************77 PP

                             SSSEE..EEEE CS
                       B3 86 grsefelvvkv 96
                             +++ f  +v++
  Rsa1.0_00122.1_g00023.1 86 KNMAF--HVTL 94
                             76777..7766 PP
2B365.86.5e-21142227794
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                               +++l+ + l +pk+f++++g+++ ++ +++l++e+gr W++ +  +k sg++++++GW++F+ angLk+g + +Fkl++r ++ +
  Rsa1.0_00122.1_g00023.1 142 WPSSLRYDTLNIPKSFVRANGLETSCGGEIVLMNEKGRPWTLVI-NQKLSGTTYIRRGWRRFCIANGLKTGGVYTFKLIQRGGA-P 225
                              567889999***********************************.4777777***************************96444.5 PP

                              EE CS
                       B3  93 vv 94 
                              v+
  Rsa1.0_00122.1_g00023.1 226 VL 227
                              55 PP
3B367.42e-21266349792
                              .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                              +  +l+ + l+lp kf +e+g++++++ +++l++e+gr+W++kl+ + + g++++t+GW++F++angL++g ++ +kl++ +++ l
  Rsa1.0_00122.1_g00023.1 266 SRATLRYDTLSLPVKFSRENGLDTRCG-EIVLMNEKGRTWKLKLKRKSSCGTMYITRGWRSFCSANGLRAGSSFPLKLIK-KGGAL 349
                              566778899**************9987.****************76666666*************************998.45444 PP
4B357.52.4e-18413504497
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               ++++ +l++ +l+lp +f ++hg+++e  +++tl d++g +W+  l+ + +s+r+ l +GW+eF kan +k+g++++ kl+++ +
  Rsa1.0_00122.1_g00023.1 413 LTLRPFNLEKYILYLPVPFSRSHGINEE--TKMTLLDKNGVKWSTDLRSEENSDRIRLVGGWQEFFKANCVKTGESIIVKLVWEGD 496
                              555666788889************9954..58***************************************************988 PP

                              E..EEEEE CS
                       B3  90 felvvkvf 97 
                              +++v+ + 
  Rsa1.0_00122.1_g00023.1 497 KRCVLDFS 504
                              87877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.365598IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-186105IPR015300DNA-binding pseudobarrel domain
CDDcd100175.34E-14695No hitNo description
Gene3DG3DSA:2.40.330.105.6E-217111IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.8E-22898IPR003340B3 DNA binding domain
PfamPF023623.6E-101690IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-19129228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-19131228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.212136233IPR003340B3 DNA binding domain
SMARTSM010192.7E-24137233IPR003340B3 DNA binding domain
PfamPF023622.8E-19142228IPR003340B3 DNA binding domain
CDDcd100177.04E-16146229No hitNo description
Gene3DG3DSA:2.40.330.101.5E-19253346IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-18259353IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.552260357IPR003340B3 DNA binding domain
SMARTSM010191.1E-26261357IPR003340B3 DNA binding domain
PfamPF023621.8E-19266350IPR003340B3 DNA binding domain
CDDcd100177.27E-20269353No hitNo description
Gene3DG3DSA:2.40.330.102.6E-18402497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-20405501IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-16409504No hitNo description
PfamPF023623.4E-16410504IPR003340B3 DNA binding domain
SMARTSM010191.9E-20410507IPR003340B3 DNA binding domain
PROSITE profilePS5086313.634410506IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MRMAHKRFFK PLLPGFHSHL TIPVAFFSKY IQGTNEYHTA KLRSDASKIT WEVKVEDGQK  60
LTDGWKEFAL AHDLRIGDIL IFRQEKNMAF HVTLLGPSAC ELQYESCSEE ENNLGNIPNK  120
KNSERQAESS SLGPSCFSAN IWPSSLRYDT LNIPKSFVRA NGLETSCGGE IVLMNEKGRP  180
WTLVINQKLS GTTYIRRGWR RFCIANGLKT GGVYTFKLIQ RGGAPVLRLS SIESESESEE  240
RNMEKIQRKK AESSSVDPSC FVANISRATL RYDTLSLPVK FSRENGLDTR CGEIVLMNEK  300
GRTWKLKLKR KSSCGTMYIT RGWRSFCSAN GLRAGSSFPL KLIKKGGALA LRLSPKETDE  360
EEDCSPKANE VKSLSTEPES NEESSQDEKK IKKHRSTWKA SSSSQSQNRF VTLTLRPFNL  420
EKYILYLPVP FSRSHGINEE TKMTLLDKNG VKWSTDLRSE ENSDRIRLVG GWQEFFKANC  480
VKTGESIIVK LVWEGDKRCV LDFSSKIKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00122.1_g00023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484682.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotO230760.0REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A0D3C1U60.0A0A0D3C1U6_BRAOL; Uncharacterized protein
STRINGBo4g154840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]