PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00123.1_g00037.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 354aa MW: 38849.8 Da PI: 8.8225

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00123.1_g00037.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.3	5.7e-07	231	276	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +rsR RK+++i+eLe++v L+a +L ++ +l ++ a+l e+ Rsa1.0_00123.1_g00037.1 231 QRSRVRKLQYIAELERRVSMLQAVEADLSVRVASLVQTRATLSLEN 276 69*********************************99999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14703	3.62E-12	227	270	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.5E-4	231	282	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSRPAQLPPR CPIPKKLSLN PFADTYYSSS SPVESYIAHH KPPTQDSTLE EQPAWLDELL 60 RDKTDGMMLL TGGGGGGGPP PPLPLRRSAS DSVVLLGDIS ADFAAGFNQS EDEESLTSEA 120 CGELESACVY GPNSPRAKNS SNFSDNPIAS AFSDYGSQKA RQNSDDALKG SNVPPVEENA 180 CGSMGVPNAK RSRLIYNGRG TLWFILGFVV KHRLVLGYIG KFVDDLWNPG QRSRVRKLQY 240 IAELERRVSM LQAVEADLSV RVASLVQTRA TLSLENSQMK QQMAILKQDK LIREGEYQLL 300 KKEAQRLNSR LRNIGSNNNN RLARSYSAGS SIGPRTASSH LDWNLLDLTK LNLN

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSRPAQLPPR CPIPKKLSLN PFADTYYSSS SPVESYIAHH KPPTQDSTLE EQPAWLDELL  60
RDKTDGMMLL TGGGGGGGPP PPLPLRRSAS DSVVLLGDIS ADFAAGFNQS EDEESLTSEA  120
CGELESACVY GPNSPRAKNS SNFSDNPIAS AFSDYGSQKA RQNSDDALKG SNVPPVEENA  180
CGSMGVPNAK RSRLIYNGRG TLWFILGFVV KHRLVLGYIG KFVDDLWNPG QRSRVRKLQY  240
IAELERRVSM LQAVEADLSV RVASLVQTRA TLSLENSQMK QQMAILKQDK LIREGEYQLL  300
KKEAQRLNSR LRNIGSNNNN RLARSYSAGS SIGPRTASSH LDWNLLDLTK LNLN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00123.1_g00037.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY099881	1e-113	AY099881.1 Arabidopsis thaliana unknown protein (At5g04840) mRNA, complete cds.
GenBank	BT008710	1e-113	BT008710.1 Arabidopsis thaliana At5g04840 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442824.1	0.0	PREDICTED: basic leucine zipper 6
Refseq	XP_018442825.1	0.0	PREDICTED: basic leucine zipper 6
TrEMBL	A0A3P6EAD3	1e-175	A0A3P6EAD3_BRAOL; Uncharacterized protein
STRING	Bo9g179040.1	1e-172	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13642	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	7e-18	bZIP family protein