PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00126.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 296aa    MW: 33886.1 Da    PI: 6.9398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00126.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10119165455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  Rsa1.0_00126.1_g00012.1 119 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRVKQLQ 165
                              699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.297115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15119183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15119180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-9120169No hitNo description
SMARTSM003531.1E-12121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDADFFLTDF SLENIDFDFN TYEEMNVTPV EASMHTQRAQ FSSNFHHQMH LDFLKGKPNP  60
VEKEMMKINN KPRVISFDFS SNVSSSTAEE DIIMDRLANC GSKRKACSST TRSPVLAKEH  120
VIAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQIRK LKEEKEARRE  180
MESMILVKKS KVFIDQEPHQ SSSCSSYHEK FDQLLPEIEA KVVQKEVLIR IHCEKSKGCM  240
INILNTIENL QLRIENSIVL PFGDSTLDIT VLAQMGKDFS VCALEDLVRN LRLSMA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
2124129RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00126.1_g00012.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480745.10.0PREDICTED: transcription factor bHLH19
SwissprotQ1PF161e-152BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A3P6CXT00.0A0A3P6CXT0_BRACM; Uncharacterized protein
STRINGBo4g151000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-135bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]