PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00128.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 184aa    MW: 21101.1 Da    PI: 8.4862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00128.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM447.2e-1431124294
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr..atksgy 82 
                               pG+r  P+d+e+v+ +L+++v++ +++   v++  d y+++P+ +p    ++  +++e +fF++r     +g+r nr  a +sg+
  Rsa1.0_00128.1_g00012.1  31 IPGVRLAPKDSEVVHLFLQRRVQHLPINNYLVFDMEDFYDTHPQFIPLpqpHIFLDHQESWFFVERTM---QGQRVNRlvADNSGR 113
                              69************************9998889999********998434555557889999999876...5899***744569** PP

                      NAM  83 Wkatgkdkevls 94 
                              W  + k  ++++
  Rsa1.0_00128.1_g00012.1 114 WVGQKK-YSIMK 124
                              *97766.44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-1126117IPR003441NAC domain
PROSITE profilePS5100513.00730184IPR003441NAC domain
PfamPF023653.4E-632124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MWLPISSPVI IIDRPLCNST VKLLPTMDNV IPGVRLAPKD SEVVHLFLQR RVQHLPINNY  60
LVFDMEDFYD THPQFIPLPQ PHIFLDHQES WFFVERTMQG QRVNRLVADN SGRWVGQKKY  120
SIMKGAELKK KNNKPKRPSI KSLFEEDESS EGKTTHQGSF LNLLPTQMED PEREGSSKSS  180
SSGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00128.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-