PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00131.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 364aa    MW: 41047.5 Da    PI: 7.0065
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00131.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-072949526
                             --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                              C f+++ G+C yG+rC++ H+
  Rsa1.0_00131.1_g00012.1 29 VCTFYQK-GICLYGSRCRYEHV 49
                             6******.***********997 PP
2zf-CCCH21.15.6e-0791113326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              +++C+ fa+ G C++G++C+ +Hg
  Rsa1.0_00131.1_g00012.1  91 YPICS-FAAAGDCPRGSQCPHMHG 113
                              68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.455128IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-7426IPR000571Zinc finger, CCCH-type
SMARTSM003560.132850IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0942951IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.39988115IPR000571Zinc finger, CCCH-type
SMARTSM003560.02488114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.8E-10138216IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.59E-13146221No hitNo description
CDDcd001620.00101156216No hitNo description
PfamPF000978.9E-8157214IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.386157215IPR001841Zinc finger, RING-type
SMARTSM001848.7E-8157214IPR001841Zinc finger, RING-type
PROSITE patternPS005180181190IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.253244273IPR000571Zinc finger, CCCH-type
SMARTSM003560.75244272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSDRILCKFF IHGSCLKGEH CEYSHDSNVC TFYQKGICLY GSRCRYEHVR TTSQPHVPPP  60
PPPPLPSDSH PQEKGDNNNN DDVCYIHPRE YPICSFAAAG DCPRGSQCPH MHGDVCSTCG  120
KKCLHPFRPE EREEHTKECE KKQKRIEALK KSQEIECSVC LDRVLSKATP GERKFGLLTE  180
CHHPFCIQCI RNWRSSAPVS GMDVNSTLRA CPICRKLSYF VVPSVVWYST PDEKKEIIDI  240
YKAKLRSINC KHFNFGNGNC PFGGSCFYKH AYSDGQLDEV VVRNLGSQEG ETVIADSYLS  300
SLVVCIFEIS FPKYSNNTGA DDNILIFQTH LIPVDNPLKL DMKTCSEGDT SSKDIRTTEE  360
NSNL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00131.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437876.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like
SwissprotQ6IDS60.0C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A398AV600.0A0A398AV60_BRACM; Uncharacterized protein
STRINGBra040048.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-156C3H family protein