PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00136.1_g00021.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

YABBY

Protein Properties

Length: 168aa MW: 19060.5 Da PI: 10.421

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00136.1_g00021.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199.3	1.6e-61	5	144	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsvsseklsene 105 vsvP++slf++vtvrCGhCt+l+s+n+ ++ ++ + ++++l+++ ++++s v+++e s s ++ s++ls++ Rsa1.0_00136.1_g00021.1 5 VSVPYASLFTLVTVRCGHCTNLISLNIGVSLHQSSPPP---------IHQDLQHK-QHITSSVTRKEhgssSRSFDHFSTTLSDHV 80 9************************99988765554.........44444433.333333333330000344445566779* PP YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl Rsa1.0_00136.1_g00021.1 81 EREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPQISHREAFSTAAKNWAHFPHIHFGL 144 *****99.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-58	5	144	IPR006780	YABBY protein
SuperFamily	SSF47095	1.13E-7	88	137	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	93	136	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MFDQVSVPYA SLFTLVTVRC GHCTNLISLN IGVSLHQSSP PPIHQDLQHK QHITSSVTRK 60 EHGSSSRSFD HFSTTLSDHV EREAPRMPPI RPPEKRQRVP SAYNRFIKEE IQRIKAGNPQ 120 ISHREAFSTA AKNWAHFPHI HFGLKLDSNK KGKQIDQTVA GQKSNGYY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00136.1_g00021.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	1e-175	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482032.1	1e-120	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	2e-99	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A3N6SRH4	1e-113	A0A3N6SRH4_BRACR; Uncharacterized protein
TrEMBL	M4DQ33	1e-113	M4DQ33_BRARP; Uncharacterized protein
STRING	Bra018624.1-P	1e-114	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-102	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]