PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00139.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 324aa    MW: 36101.2 Da    PI: 6.001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00139.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15125176155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++Y+k+L+
  Rsa1.0_00139.1_g00017.1 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YSQRGDQASIVGGAINYLKELE 176
                              79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.74E-15123180No hitNo description
PROSITE profilePS5088816.456124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14124180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-18124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-13125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-12130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MALEAVVYPQ DPLSYSSSND FPFRDLYFQQ GEDQDPPDTK NNIKLGQEKR QGFASINYNR  60
KGGDNSDDYS YNDQADLQWP RDELPYGSIV NTKNHPPALD VATGGERKKR RRTRSSKNKE  120
EIENQRMTHI AVERNRRKQM NEYLAVLRSL MPPSYSQRGD QASIVGGAIN YLKELEHQLQ  180
SMEPPVKTTA TEDAGAAAGD KNNTIAASSS GPFSDFFAFP QFSSRPSSSS VAEGTAEIEV  240
TMVESHASVK ILAKKRPKQL LKLVASIQSL RLTLLHLNVT THDCSVLYSI SLKVEEGSQL  300
NTVEDIAAVV NQILTRIEEE SPFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125136RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00139.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452253.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-179BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3D0260.0A0A0D3D026_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q0000.0A0A3N6Q000_BRACR; Uncharacterized protein
TrEMBLA0A3P6GFE10.0A0A3P6GFE1_BRAOL; Uncharacterized protein
STRINGBo6g114730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-158bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]