PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00139.1_g00034.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28566.3 Da    PI: 6.6712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00139.1_g00034.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.32.3e-2481129149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                              k+i+++s+rqvtfskRr+g++KKA ELSvLC+a++ +i fs +g+++++
  Rsa1.0_00139.1_g00034.1  81 KPINEESRRQVTFSKRRKGLFKKAAELSVLCGAQIGIITFSRRGRIFTF 129
                              6899********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-2873132IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.86273133IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-2374141IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-217595IPR002100Transcription factor, MADS-box
PfamPF003195.1E-2383129IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-2195110IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-21110131IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDFVSAIVDK CYYFDADAAT SVHEKNMALI YNLHILQVNS KYSCDPPPPE PSSTSTCLPL  60
TAQKPQQNPK TTKGRQKIEI KPINEESRRQ VTFSKRRKGL FKKAAELSVL CGAQIGIITF  120
SRRGRIFTFG NVDTLVENYL RKAPVTLRSH PGGGDEGEDK WWEKAVESVP EEEMEEYMTA  180
LSGLRDNLWT RICQMGGDHR TVQMDAPVFQ NPTAAIEWKV TDENLTVGND QSQAGNGGYL  240
DIHPELPFLS QSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00139.1_g00034.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456737.11e-153PREDICTED: MADS-box transcription factor 23-like
RefseqXP_018456752.11e-153PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A3P6G0K71e-104A0A3P6G0K7_BRAOL; Uncharacterized protein
STRINGBo6g115840.11e-104(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-55M-type_MADS family protein