PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00145.1_g00029.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 312aa    MW: 34749.5 Da    PI: 4.8893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00145.1_g00029.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.1e-1161102346
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k  w++
  Rsa1.0_00145.1_g00029.1  61 SFTPEEEDLIIKMHAAMGSR-WPLIAQHLP-GKTEEEVKMVWNT 102
                              79******************.*********.********88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.22E-1241112IPR009057Homeodomain-like
PROSITE profilePS5129415.73254108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-1654108IPR009057Homeodomain-like
SMARTSM007175.7E-1158106IPR001005SANT/Myb domain
CDDcd001674.70E-961104No hitNo description
PfamPF002493.2E-1061102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MVRSCSSKSK NPWTDEDNAP QKFAFASASK NGSTPKKIGL RRCGKSCRVR KTENAGAKHE  60
SFTPEEEDLI IKMHAAMGSR WPLIAQHLPG KTEEEVKMVW NTKLKKKLSQ MGIDHVTHRP  120
FSHVLAEYGN INGGGTLNPN PMNQTGSLGP NPSFNEDSHE QQQQQPDDSG DLMFHLQAIK  180
LMTESSNQVK PESTFMYASS SSSNSSPPLF SSTCSTIAQE SSEVNFTWSD FLLDQETFSE  240
NQQQNYPDQE LDNLFGNEFS EAEAVTTMAN TATPASQMEE ESLSNGFVES IIAKEKELFL  300
GFPSYLEQPF HF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00145.1_g00029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449663.10.0PREDICTED: transcription factor MYB35
TrEMBLA0A0D3DQA70.0A0A0D3DQA7_BRAOL; Uncharacterized protein
STRINGBo8g068210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-167MYB_related family protein