PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00157.1_g00018.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 182aa    MW: 21085 Da    PI: 10.4566
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00157.1_g00018.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY154.11.3e-473615851170
                    YABBY  51 akasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl....senedeevprvppvirPPekrqrvPsaynrf 132
                              +k+   ++++   + s ++++ + +k+++++++s v+++e  s+s+ss+++     e+ d+e+pr+pp irPPekrqrvPsaynrf
  Rsa1.0_00157.1_g00018.1  36 SKHWSFTSSNLTYSYSSRPSVFAIMKQHKQHITSAVTRKEYGSSSRSSNHFsttlVESVDREAPRMPP-IRPPEKRQRVPSAYNRF 120
                              444555555555667778889999**********99999998888888887444467889999**999.9**************** PP

                    YABBY 133 ikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                              ikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  Rsa1.0_00157.1_g00018.1 121 IKEEIQRIKAGNPEISHREAFSTAAKNWAHFPHIHFGL 158
                              ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.4E-4243158IPR006780YABBY protein
SuperFamilySSF470959.16E-8103151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-4106152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MHNIVRFYYI RGKCTICKFV HTCDGEMWPL YQFALSKHWS FTSSNLTYSY SSRPSVFAIM  60
KQHKQHITSA VTRKEYGSSS RSSNHFSTTL VESVDREAPR MPPIRPPEKR QRVPSAYNRF  120
IKEEIQRIKA GNPEISHREA FSTAAKNWAH FPHIHFGLKL DGNKKGKQLD QTVAGQKSNG  180
YY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00157.1_g00018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533261e-161AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450150.14e-85PREDICTED: putative axial regulator YABBY 2 isoform X1
RefseqXP_018450151.13e-85PREDICTED: putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB01e-72YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0D3C8I36e-80A0A0D3C8I3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EPL45e-80A0A3P6EPL4_BRAOL; Uncharacterized protein
STRINGBo5g009010.19e-81(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-71YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]