PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00160.1_g00025.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 149aa    MW: 17662.4 Da    PI: 10.1042
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00160.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.2e-12957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+i +   rq t  kRr gi+ KA  L  LC+++vav+++ss+g+ y +
  Rsa1.0_00160.1_g00025.1  9 KFIRDRLTRQKTELKRRIGIFSKADALAKLCNVQVAVLLMSSNGRPYVF 57
                             7899****************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.974161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-16160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-18276IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-12323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-121057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGRKNIEIKF IRDRLTRQKT ELKRRIGIFS KADALAKLCN VQVAVLLMSS NGRPYVFGSP  60
CFNSVIERHK NPNQQRSETS LPLQTRIIES RAKLDELKEE LKHQKEHEKV LKKRKEENLE  120
IYDISDLTLE EFVTFKEKLE EFSRDDMKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114KVLKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00160.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1548036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.12e-28AGAMOUS-like 102