PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00166.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 309aa    MW: 34171.8 Da    PI: 9.7823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00166.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-13101146247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++WT++E+  ++ + k+lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  Rsa1.0_00166.1_g00008.1 101 KPWTEDEHRMFLVGLKKLGKGDWRGIAKSFVTTRTPTQVASHAQKY 146
                              58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.91895151IPR017930Myb domain
SuperFamilySSF466897.48E-1797151IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-1798149IPR006447Myb domain, plants
SMARTSM007176.7E-1199149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-1199145IPR009057Homeodomain-like
PfamPF002491.6E-11101146IPR001005SANT/Myb domain
CDDcd001671.45E-9102147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMTTAKTCSH CGNNVHDARP CCLNSVNKGS VKLFGVDISS DPIKSPEVTA LRKCLSLGNL  60
DSLLDNGNGD LIAAVEDTGY HSDGQIHSKR GRSSHEKKKG KPWTEDEHRM FLVGLKKLGK  120
GDWRGIAKSF VTTRTPTQVA SHAQKYFLRL NGNDKRKRRA SLFDISLEDQ KGKEKNSPDA  180
STSSSKTPSK QPITGSQEPV QVQTPTEVSN RFQNLSMGYM PTYQNVPPYY NFSPFMFHPM  240
YYANLVPIRY DHPSGIPVPR HVPISMPQPH LDKVSDMTKK EGLELDIGLP PPKSTGATDL  300
TANGIIHVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00166.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461292.10.0PREDICTED: myb-like protein J isoform X1
SwissprotQ9FKF91e-165M5162_ARATH; Probable transcription factor At5g61620
TrEMBLA0A078JNX70.0A0A078JNX7_BRANA; BnaCnng59200D protein
STRINGBo2g161470.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-141MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]