PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00167.1_g00020.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 590aa    MW: 66733 Da    PI: 6.104
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00167.1_g00020.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.92.4e-2755139187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW++qe+laL+++r+em+ ++r++  k+plWeevs+km e g+ r++k+Ckek+en+ k+ k++keg+ ++++++  t+++fdqle
  Rsa1.0_00167.1_g00020.1  55 RWPRQETLALLKIRSEMGIAFRDATVKGPLWEEVSRKMGELGYIRNAKKCKEKFENVYKYNKRTKEGRTGKSEGK--TYRFFDQLE 138
                              8********************************************************************975544..6*******8 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_00167.1_g00020.1 139 A 139
                              5 PP
2trihelix104.48.5e-33403488187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                              rW+k e+ aLi++r+++++++++   k+plWee+s+ mr+ gf+r++k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+ql+
  Rsa1.0_00167.1_g00020.1 403 RWPKVEIEALIKLRTNLDTKYQEHVPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLD 487
                              8*********************************************************************8.99***********8 PP

                 trihelix  87 a 87 
                              a
  Rsa1.0_00167.1_g00020.1 488 A 488
                              5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01452114IPR001005SANT/Myb domain
CDDcd122031.56E-2154119No hitNo description
PfamPF138372.0E-1654140No hitNo description
PROSITE profilePS500907.1254112IPR017877Myb-like domain
PROSITE profilePS500907.166396460IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-4400459IPR009057Homeodomain-like
SMARTSM007170.0012400462IPR001005SANT/Myb domain
CDDcd122033.83E-25402467No hitNo description
PfamPF138373.0E-22402489No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MMQQGGSTTT ANAKEAVPLQ YNESAATEAA AATAAAVGAF EVSEEMGDRG FGGNRWPRQE  60
TLALLKIRSE MGIAFRDATV KGPLWEEVSR KMGELGYIRN AKKCKEKFEN VYKYNKRTKE  120
GRTGKSEGKT YRFFDQLEAL ETHSTSSSLH PHQQTQSQPL QPQPLPPHNN ISSMFSTPPP  180
VTTVTPPTTN ITPVNISSFP NISGEFLSDN STSSSYSTSS DVEVGGTTTT TRRKKRKRKR  240
KWEEFFERLM KQVVDKQEEL QRKFLEAVEK REQERMVREE SWRVQEIARI NREHEILAQE  300
RSMSAAKDAA VMAFLQKFSE KPNPQCQSIV IPQPQPQQQH ARSQMLVNNN NQQVTSQQTP  360
QTPPPQPSHA VIPTFDTTTE TNNSDQNMTP ASASTGGAVS SSRWPKVEIE ALIKLRTNLD  420
TKYQEHVPKG PLWEEISAGM RRLGFNRNSK RCKEKWENIN KYYKKVKESN KKRPEDSKTC  480
PYFHQLDALY KERNNFHTNN NHNIASSSST SGLVKPDNLV PLMVQPEQQW PPATATTVGA  540
TAQPDQHPPL PPPPQPLDHN FDEEEGTDEE EYDDEEDDEE DQEEEEGGEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237RKKRKR
2232240RKKRKRKRK
3233238KKRKRK
4234240KRKRKRK
5235240RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00167.1_g00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477779.10.0PREDICTED: trihelix transcription factor GT-2-like
RefseqXP_018477782.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-138TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A398AB830.0A0A398AB83_BRACM; Uncharacterized protein
STRINGBra008285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-179Trihelix family protein