PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00167.1_g00022.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 465aa MW: 53690.8 Da PI: 8.8593

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00167.1_g00022.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.4	1.6e-12	1	47	38	86
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 m+e g++rs+k+Ckek+en+ k++k++keg+ ++++++ t+++f++l+ Rsa1.0_00167.1_g00022.1 1 MMELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFEKLQ 47 89****************************975544..6****98 PP
2	trihelix	107.7	7.9e-34	295	380	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++e +++++ k+plWee+s mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qle Rsa1.0_00167.1_g00022.1 295 RWPKTEVDALIRIRKNLEANYQENGTKGPLWEEISGGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLE 379 8*******************************************************************8.9**********8 PP trihelix 87 a 87 a Rsa1.0_00167.1_g00022.1 380 A 380 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-7	1	49	No hit	No description
SMART	SM00717	0.0086	292	354	IPR001005	SANT/Myb domain
Pfam	PF13837	1.3E-23	294	381	No hit	No description
CDD	cd12203	8.85E-27	294	359	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.9E-4	294	351	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.236	294	352	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MMELGYKRSA KKCKEKFENV YKYHKRTKEG RTGKSEGKTY RFFEKLQALE ALINPYPPEP 60 ESQPAKSSTA TTLVTTTTSS IPLKHHHHQV SVKPFATNPN FHLKQPSPTT PFPIYSNNLN 120 TGFRPTSNDL INNVSSLNLF SSSTSSSTAS DEEDDHHQDK GSRKKRKYWK GLYTKLTKDL 180 IEKQEKMQKR FLETFENQER ERISREEAWR VQEVARINRE HETLVHERSS AVAKDAAIIS 240 FLHKISGGQQ QQSHQNHKVP QRKPYHSEHS ITFESKEPRP VLFDGNHSLS PSSSRWPKTE 300 VDALIRIRKN LEANYQENGT KGPLWEEISG GMRRLGYNRS AKRCKEKWEN INKYFKKVKE 360 SNKKRPLDSK TCPYFHQLEA LYNERGKSGA LPVLPLMGTP QRQLLLPQET QTEVETDQGD 420 KGEEGESEED DYEDEDEEGD NETSEFEIVL NKTSSPMDIN NNIFT

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MMELGYKRSA KKCKEKFENV YKYHKRTKEG RTGKSEGKTY RFFEKLQALE ALINPYPPEP  60
ESQPAKSSTA TTLVTTTTSS IPLKHHHHQV SVKPFATNPN FHLKQPSPTT PFPIYSNNLN  120
TGFRPTSNDL INNVSSLNLF SSSTSSSTAS DEEDDHHQDK GSRKKRKYWK GLYTKLTKDL  180
IEKQEKMQKR FLETFENQER ERISREEAWR VQEVARINRE HETLVHERSS AVAKDAAIIS  240
FLHKISGGQQ QQSHQNHKVP QRKPYHSEHS ITFESKEPRP VLFDGNHSLS PSSSRWPKTE  300
VDALIRIRKN LEANYQENGT KGPLWEEISG GMRRLGYNRS AKRCKEKWEN INKYFKKVKE  360
SNKKRPLDSK TCPYFHQLEA LYNERGKSGA LPVLPLMGTP QRQLLLPQET QTEVETDQGD  420
KGEEGESEED DYEDEDEEGD NETSEFEIVL NKTSSPMDIN NNIFT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	14	KRSAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00167.1_g00022.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY087117	1e-163	AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478957.1	0.0	PREDICTED: trihelix transcription factor GT-2-like isoform X2
Swissprot	Q39117	0.0	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	M4CVN9	0.0	M4CVN9_BRARP; Uncharacterized protein
STRING	Bra008286.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5995	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	0.0	Trihelix family protein