PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00168.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 221aa    MW: 24958 Da    PI: 6.1601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00168.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09125165954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  Rsa1.0_00168.1_g00017.1 125 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 165
                              599*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14122174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-12124172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-7126165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-7139170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNGNNTNPSV AQNYTWNNIV MNNKSDHHHH NDPIGMAAMD QHPQLRIFNP FTSSHLPPLS  60
SSLSATTFFS EDQEEEEEPV EKLSAMKEMM YKVAAMQPVD IDPETVKIPK RRNVRISDDP  120
QTVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIR YIKFLKRQIR LLDNPPPPQD  180
QDSQAMTTSW FSQLPPPDFG SGAGGSDWCK TANTTAAESE T
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00168.1_g00017.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545972e-86AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443360.11e-159PREDICTED: transcription factor HEC3-like
SwissprotQ9LXD83e-75HEC3_ARATH; Transcription factor HEC3
TrEMBLA0A078G9C41e-101A0A078G9C4_BRANA; BnaC09g46950D protein
STRINGBo2g009510.13e-93(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.16e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]