PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00170.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 386aa    MW: 44010.1 Da    PI: 7.2356
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00170.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-201353545
                             SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             +   rq t++kR+ngi+KKA+ELS+LCd++v +++fs+ gk
  Rsa1.0_00170.1_g00026.1 13 SINARQATYCKRKNGIMKKAKELSILCDIDVVLLMFSPAGK 53
                             55679*********************************997 PP
2K-box17.61.6e-071131882190
                    K-box  21 lakLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                              ++ L ++++ Lq        R   + ++e+  s+ +LqqLe+ + +sl +iR +K+++l+ q +++q + +e ++e
  Rsa1.0_00170.1_g00026.1 113 IEVLSEQVRFLQthlseIHTRLSYWTEVEKVdSIDDLQQLENSVRQSLYQIRVHKENMLHHQQQQQQLMSNECKNE 188
                              55566666666655544444566677777774689********************************999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.511153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-23293IPR002100Transcription factor, MADS-box
CDDcd002664.88E-22284No hitNo description
PRINTSPR004043.1E-15323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181554IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-153859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.68106207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGRVKLKIKK LDSINARQAT YCKRKNGIMK KAKELSILCD IDVVLLMFSP AGKPSLCCGK  60
HSIGEVIAKF AQLAPQERAK RKLDNLEALK KTFMKLDHDV NISEFLERSK PTIEVLSEQV  120
RFLQTHLSEI HTRLSYWTEV EKVDSIDDLQ QLENSVRQSL YQIRVHKENM LHHQQQQQQL  180
MSNECKNELQ SDIDLDFGID IEQQLENFSW VRTDENMNAP IKEEDPNLQF YHTYKDLTCS  240
ASSSLESYSG LFGKSSDFKT PKVETGGNPG PLVDPNLQYS NLSFLNDPKL QQLAEWNLLG  300
SPADYYVSQI LEASYRPQFG GNWPSSETLN YPFTVFDDPL LSRVKQRFSS SFICFTVMLL  360
HVLIVSDISK SAAAKPISSS GKNTKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00170.1_g00026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455205.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_018455206.10.0PREDICTED: agamous-like MADS-box protein AGL30 isoform X1
SwissprotQ1PFA46e-87AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLM4CJK90.0M4CJK9_BRARP; Uncharacterized protein
STRINGBra004393.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149561620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.11e-174AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]