PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00174.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 257aa    MW: 29466.2 Da    PI: 9.9588
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00174.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2191150357
                              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Rsa1.0_00174.1_g00010.1  91 TRWNPTQEQIGILEMLYKGgMRTPNAQQIEQITSQLgkygKIEGKNVFYWFQNHKARERQ 150
                              7*****************99**************************************97 PP
2Wus_type_Homeobox117.46.6e-3891152465
        Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq
  Rsa1.0_00174.1_g00010.1  91 TRWNPTQEQIGILEMLYKGGMRTPNAQQIEQITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 152
                              8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.34986151IPR001356Homeobox domain
SuperFamilySSF466892.1E-1288155IPR009057Homeodomain-like
SMARTSM003891.3E-788155IPR001356Homeobox domain
CDDcd000867.75E-591152No hitNo description
PfamPF000464.9E-1991150IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-892150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKVHEFSNGF SSWEQHDSPP SLSLSCKRLR PLAPKLSSSP CSPPPSSSGV TSATFDLKTF  60
IKPDQTCPRK FEYSIDHKRD LPQVETHSGG TRWNPTQEQI GILEMLYKGG MRTPNAQQIE  120
QITSQLGKYG KIEGKNVFYW FQNHKARERQ KQKRNNFISL SCQRSFKKTN INNTSVTTKT  180
TTTSSLEVIK RDSMVEKGEL VEENEYKRTC RSWGFENLEI DSRRNINSSR NATMATTFNK  240
IIDNVTLELF PLYPEGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00174.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449243.10.0PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J91e-131WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A1P8YZI90.0A0A1P8YZI9_RAPSA; WOX4
STRINGBra014055.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59802747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-124WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]