PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00178.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 302aa    MW: 33563.7 Da    PI: 6.6064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00178.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.69.1e-1146106147
                              TSSS-HHHHHHHHHHHHHTTTT...............-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............tWktIartmgkgRtlkqcksrwqky 47 
                              r +WT+ E++++++a +++                  +Wk+I   +g  +t  q++s+ qky
  Rsa1.0_00178.1_g00009.1  46 RESWTEGEHDKFLEALQLHSVAdtvsdkkncvlrfdrDWKKIEDFVG-SKTVIQIRSHAQKY 106
                              789*****************99*************************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.04E-1340112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-644112IPR009057Homeodomain-like
SMARTSM007172.3E-745109IPR001005SANT/Myb domain
PfamPF002497.2E-846106IPR001005SANT/Myb domain
CDDcd001678.14E-648107No hitNo description
TIGRFAMsTIGR015576.4E-876109IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTSLSLSSNP VVAEERPSTD LTETTTVTSE APEKKVRKAY TITKSRESWT EGEHDKFLEA  60
LQLHSVADTV SDKKNCVLRF DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTLAHVP  120
PPRPKRKAAH PYPQKASKNA QMSLHVSMAF PTQINNVPGY TSWDDDTSAL LNIAVSEVVL  180
PKDELATLCG GEGMHSHFYS FSSYDAWQPD EESGIGSSSR TLSDSKTGNQ APSMHGLPDF  240
AEVYNFIGSV FDPDSKGRMK KLKEMDPINF ETVLLLMRNL TVNLANPDFE PACGNPGQEP  300
NK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00484DAPTransfer from AT5G02840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00178.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3526241e-124AK352624.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-06-K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445525.11e-175PREDICTED: protein REVEILLE 4 isoform X1
RefseqXP_018445526.11e-175PREDICTED: protein REVEILLE 4 isoform X2
SwissprotQ6R0G41e-150RVE4_ARATH; Protein REVEILLE 4
TrEMBLA0A3P6DDF71e-167A0A3P6DDF7_BRACM; Uncharacterized protein
STRINGBra009562.1-P1e-162(Brassica rapa)
STRINGBo9g183320.11e-160(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152131118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.31e-138LHY/CCA1-like 1
Publications ? help Back to Top
  1. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]