PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00179.1_g00035.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 236aa MW: 27057 Da PI: 8.2047

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00179.1_g00035.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	106.7	1.1e-33	32	138	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k ltpsdv+k++rlv+pk++ae++ ++ e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD Rsa1.0_00179.1_g00035.1 32 FEKSLTPSDVGKLNRLVIPKQYAEKYlplnngggDMTAEKGMLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSKYVKDKHLDAGD 117 99****************************9978888******************************************* PP EEEEEE-SS.SEE..EEEEE-S CS B3 79 fvvFkldgr.sefelvvkvfrk 99 +v F+++ r + +l+++++r+ Rsa1.0_00179.1_g00035.1 118 VVFFQRH-RfDFHRLFIGWRRR 138 ***65.44888899999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.7E-40	28	147	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.26E-31	30	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.30E-31	31	129	No hit	No description
Pfam	PF02362	2.5E-30	32	138	IPR003340	B3 DNA binding domain
SMART	SM01019	4.5E-25	32	139	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.452	32	139	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MSVDNYSRDI YHNTVSMNHH QNDAVAYRES LFEKSLTPSD VGKLNRLVIP KQYAEKYLPL 60 NNGGGDMTAE KGMLLSFEDE SGKSWKFRYS YWNSSQSYVL TKGWSKYVKD KHLDAGDVVF 120 FQRHRFDFHR LFIGWRRRGE ASYPSAVSAV SQEVHVNTTA YWSGLTTPYR QVHTSTSSYP 180 NIHQEYSQYG AVAETPTVVA RSSRTVRLFG VNLECHGDVV EPPPCPDGYN GQHIYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	1e-47	25	138	1	113	B3 domain-containing transcription factor NGA1
5os9_B	1e-47	25	138	1	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00179.1_g00035.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487198.1	1e-179	PREDICTED: B3 domain-containing protein At3g11580-like
Refseq	XP_018487199.1	1e-179	PREDICTED: B3 domain-containing protein At3g11580-like
Swissprot	Q8RYD3	1e-126	Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBL	A0A0D3BAS0	1e-150	A0A0D3BAS0_BRAOL; Uncharacterized protein
TrEMBL	A0A398A1Z8	1e-150	A0A398A1Z8_BRACM; Uncharacterized protein
TrEMBL	M4CB32	1e-150	M4CB32_BRARP; Uncharacterized protein
STRING	Bra001411.1-P	1e-151	(Brassica rapa)
STRING	Bo3g064320.1	1e-151	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11580.1	1e-128	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]