PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00180.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 1051aa    MW: 117364 Da    PI: 4.5761
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00180.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.48.9e-27117199271
                  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                              ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+
  Rsa1.0_00180.1_g00003.1 117 TGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtppdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWR 198
                              689********...*****999*******************************************************.*******9 PP

                  E2F_TDP  71 g 71 
                              g
  Rsa1.0_00180.1_g00003.1 199 G 199
                              8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-45112205IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.2E-35116199IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-20119200IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-24119199IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144585.91E-31204342IPR014889Transcription factor DP, C-terminal
SMARTSM011381.3E-44206391IPR014889Transcription factor DP, C-terminal
PfamPF087813.4E-31269367IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-30269360No hitNo description
SuperFamilySSF812969.8E-169641049IPR014756Immunoglobulin E-set
CDDcd028596.54E-209661049No hitNo description
PfamPF165611.7E-169671050IPR032640AMP-activated protein kinase, glycogen-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1051 aa     Download sequence    Send to blast
MTTTTTSGSN SNHNNRHEEG SVTNNNNNNP STRSWGTVVS AQSVSTSGGS MGSPSSRSEQ  60
ATTTTLATTT TTTSATDSAF LQLNNLDIQG DDAASQGPSG SGKKKKSRQR ATGPDKTGRG  120
LRQFSMKVCE KVESKGRTTY NEVADELVAE FALPNNDGTP PDQQQYDEKN IRRRVYDALN  180
VLMAMDIISK DKKEIQWRGL PRTSLSDIEE LKAERLSVRN RIEKKIAYAQ ELEEQVKDTT  240
AFHLTVSSYL TIIRFLHASS FFFIFCVCEK YVGLQNLIRR NEHLYSSGNP PSGGVALPFI  300
LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDNFVLK TMKFCEQPPF NNGTHNNSQQ  360
QTSHSFLLEN NNEGTGTDPA PPQPADASHP QLPQHQLHSQ PHVTPTHVTN NDVAQATSPP  420
VSFTYDISRD NLRFDGGTEV RPTAMATLSF FSSLASLHNR NPMFYHQQPQ LPFVPHLNNL  480
KKKKKKNAFI CFACSTKQTR VRKRVKSNEE LRNEILEFVA LAGLPPGHVP SMKELSAHQR  540
VDLANVVRRR GYKFIRELLS NSETEDCTEL TSPSGISLED SLTEEGQDEE ALDGSLPTEE  600
RPSSTDIYSN ATDASVSLDR ITNSFPEEVD EAYSSPEDDE CVSVSNDESS LAALSSMESS  660
IPDLDDSNHS ADITESKSKI ESVELSNVAD TESSSSSVSD LDYTSSSSER EADNVLVTEE  720
DEEVNDVEDD SSLLSYDHYT SQDLNHTTKN VVESVATESL SGENTMANAE NFQNQQIDHM  780
AEKRSDDILV EPDDKDWMLG LPSSTSSIEE KTTRFIQNGY LDTVDDDDEN DRLNEETNKG  840
GEYSQRSVSM APNGSALAYE EVTHATQVNN SKRNSDQRHG NAELDKDSHD EDMKRENQVE  900
ITRLRFMLRQ KELELSRLKE QIEKEKLSLS VLQRKAETEI QKAQMLVSQK DVELQEAEES  960
LSGLQEVEIE YCGDGNVVEV TGSFNGWEHR VGLELETSKS TGKQKCWSTL LWLYPGTYEI  1020
KFIVDGQWIT DPRRDSVTRG HVTNNILKVD R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35110204193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in starch granule initiation in leaf chloroplasts. {ECO:0000269|PubMed:28684429}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00180.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860181e-156AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446207.10.0PREDICTED: uncharacterized protein LOC108817884 isoform X1
RefseqXP_018446214.10.0PREDICTED: uncharacterized protein LOC108817886 isoform X1
SwissprotF4KFB30.0PTST3_ARATH; Protein PTST homolog 3, chloroplastic
TrEMBLM4CZ830.0M4CZ83_BRARP; Uncharacterized protein
STRINGBra009530.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1044334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-148Transcription factor DP
Publications ? help Back to Top
  1. Seung D, et al.
    Homologs of PROTEIN TARGETING TO STARCH Control Starch Granule Initiation in Arabidopsis Leaves.
    Plant Cell, 2017. 29(7): p. 1657-1677
    [PMID:28684429]